Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4172239_4175810_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

4172239 - 4175810

Intron Length:

3572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGATT

5'SS Class:

strong_major

3'SS Sequence:

TGTGATGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

ATACTTCTAACA

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

84.2

33.4

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

0.5

1.1

61.8

48.3

Minor 5ss

44.3

-0.6

3.2

65.5

45.8

Minor BPS

52.8

0.08

1.6

64.61

Associated Gene:

Gene:

RNPC3

Ensembl Gene ID:

ENSAPLG00000015605

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016267

4160478 - 4175886

15409