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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4179498_4180326_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4179498 - 4180326
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATCTTATTCACA
Flanking Amino Acid:
LAPNGFGGVQISPPNENVIV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.6
0.64
0.9
72.8
35.9
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
49.9
-0
2
66.18
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015681
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016383
4179330 - 4182718
3389