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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4180474_4180770_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4180474 - 4180770
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CATCATTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTCTTAAACT
Flanking Amino Acid:
DMVTRCNSVGVHIYVDAVIN
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.1
0.5
0.9
66.1
35.1
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
72.4
0.78
1.6
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015681
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016383
4179330 - 4182718
3389