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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4266858_4270325_F

Intron Information:

Intron Rank:
125974
Intron Class:
major
Intron Phase:
Intron Coordinates:
4266858 - 4270325
Intron Length:
3468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTCTCAGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
67.9
38.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
32.7
-2
3.1
42.6
37
Minor BPS
53.1
0.18
1.8
75.17
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037900
4266232 - 4270745
4514