Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4266858_4277557_F

Intron Information:

Intron Rank:

125976

Intron Class:

major

Intron Phase:

Intron Coordinates:

4266858 - 4277557

Intron Length:

10700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTTAGTGCC

5'SS Class:

major

3'SS Sequence:

ATGTGTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATACTTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.2

67.9

38.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

76.6

0.6

0.9

70.1

40.8

Minor 5ss

32.7

-2

3.1

42.6

Minor BPS

59.1

0.28

1.3

65.16

34.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017867

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039285

4266232 - 4278423

12192