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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4266858_4286667_F

Intron Information:

Intron Rank:
125972
Intron Class:
major
Intron Phase:
Intron Coordinates:
4266858 - 4286667
Intron Length:
19810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTTGTTTGTGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
67.9
38.9
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
78
0.63
0.8
70
36.5
Minor 5ss
32.7
-2
3.1
42.6
37
Minor BPS
39.2
-0.7
3.7
74.14
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033687
4266232 - 4289284
23053