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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4270486_4270576_F

Intron Information:

Intron Rank:
125975
Intron Class:
major
Intron Phase:
Intron Coordinates:
4270486 - 4270576
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATAC
5'SS Class:
major
3'SS Sequence:
GTCTTTCCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGTTTTCCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
64.7
36.1
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
67.8
0.4
1
71.8
33.1
Minor 5ss
49.9
-0
2.5
67.6
43.7
Minor BPS
47.7
-0
1.9
70.79
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037900
4266232 - 4270745
4514