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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4277982_4286667_F

Intron Information:

Intron Rank:
125977
Intron Class:
major
Intron Phase:
Intron Coordinates:
4277982 - 4286667
Intron Length:
8686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTTGTTTGTGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
83.7
27.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
78
0.63
0.8
70
36.5
Minor 5ss
34.2
-1.8
2.9
44.9
43.2
Minor BPS
39.2
-0.7
3.7
74.14
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017867
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039511
4277474 - 4289284
11811