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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_436525_436766_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
436525 - 436766
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATATATATAATA
Flanking Amino Acid:
KIKTREMKINCLIQAQLGCI
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
1
92.3
24.3
Major BPS
80
0.75
1
78.6
31
Major PPT
88.1
0.86
0.7
85.6
28.2
Minor 5ss
31.5
-2.1
4
48.3
41.8
Minor BPS
51.1
0.03
1.7
64.72
35.2

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594