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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_436815_436905_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
436815 - 436905
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATATTTTCATG
Flanking Amino Acid:
LNKDKDKITIRFPLEGKIKT
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.9
0.63
0.9
74.2
35.4
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
48.3
-0.2
1.8
56.23
40

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594