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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_437013_437878_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
437013 - 437878
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTTAA
5'SS Class:
major
3'SS Sequence:
TAAATTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAAAATTTAAAT
Flanking Amino Acid:
IKGTETLNELVTMISNCAEF
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
74.8
30.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.3
0.5
1
65
45.1
Minor 5ss
39.7
-1.2
2.8
46.3
44.2
Minor BPS
49.7
0.06
1.6
64.16
39.1

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594