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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_437971_438598_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
437971 - 438598
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
MDKENSFKPTETGRLMAWYY
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594