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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_440870_441552_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
440870 - 441552
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
MLNGADIIESSLHRHLVEHL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594