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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_442255_444279_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
442255 - 444279
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TGATCTGATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATACTTTGATC
Flanking Amino Acid:
AFTDGDLPVLFTTSTLAMGV
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
68.9
37.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
63.4
0.3
1
55.3
44.7
Minor 5ss
36.1
-1.6
3
47.1
42.6
Minor BPS
66.2
0.49
1.2
70.99
34.3

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594