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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_445486_445938_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
445486 - 445938
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATTTAAAT
Flanking Amino Acid:
VSATIPNAEDIAEWLSDGKM
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
81
31.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.2
0.75
0.9
85.5
26.4
Minor 5ss
38.8
-1.3
3.7
60.9
43.8
Minor BPS
68.3
0.65
1.6
83.76
36.4

Associated Gene:

Gene:
HFM1
Ensembl Gene ID:
ENSAPLG00000013639
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014234
430122 - 486715
56594