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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4650771_4654721_R

Intron Information:

Intron Rank:
129764
Intron Class:
major
Intron Phase:
Intron Coordinates:
4650771 - 4654721
Intron Length:
3951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTCACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
60.6
0.41
1.7
77.17
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016998
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036561
4600878 - 4656231
55354
ENSAPLT00000026507
4600558 - 4655399
54842