About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_4853008_4888361_R

Intron Information:

Intron Rank:
129423
Intron Class:
major
Intron Phase:
Intron Coordinates:
4853008 - 4888361
Intron Length:
35354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGACTCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.5
0.51
0.9
69.2
36.8
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016838
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027287
4852009 - 4931894
79886