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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_488280_489551_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
488280 - 489551
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCCGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
RKHEQNSKLSEGIKKDIEKL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70.4
0.46
1
72
32.2
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023602
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038246
488179 - 491807
3629