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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_489639_491487_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
489639 - 491487
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CCTTCTTTACAG
Flanking Amino Acid:
VFKIKEKIGEGTFSSVYLAT
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
84.5
0.78
0.7
78.7
27
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
50.4
-0.1
1.8
55.63
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023602
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038246
488179 - 491807
3629