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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5059796_5111718_R

Intron Information:

Intron Rank:
134156
Intron Class:
major
Intron Phase:
Intron Coordinates:
5059796 - 5111718
Intron Length:
51923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTCATAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
100
1.24
0.5
100
0
Major PPT
70.9
0.47
1
66.8
37.5
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
62.5
0.39
2
76.36
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019452
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048472
5059578 - 5115136
55559