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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5120468_5127565_R

Intron Information:

Intron Rank:
137339
Intron Class:
major
Intron Phase:
Intron Coordinates:
5120468 - 5127565
Intron Length:
7098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTCAAATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATATCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67.7
0.4
1
57.7
41.9
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
53.1
0.18
1.7
70.23
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021382
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019581
5120372 - 5141592
21221