Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5127671_5140892_R

Intron Information:

Intron Rank:

137340

Intron Class:

major

Intron Phase:

Intron Coordinates:

5127671 - 5140892

Intron Length:

13222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTGTGAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AGTTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.1

35.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.3

0.66

1.1

82.9

32.5

Minor 5ss

29.8

-2.3

3.3

37.5

47.2

Minor BPS

60.1

0.4

1.5

74.2

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021382

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019581

5120372 - 5141592

21221