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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5224016_5250980_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5224016 - 5250980
Intron Length:
26965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTCTTTTATT
Flanking Amino Acid:
YAISDIRVYGRCKCNLHATG
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.5
0.42
1
64.1
39.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
64.8
0.55
1.6
77.55
39.3

Associated Gene:

Gene:
NTNG1
Ensembl Gene ID:
ENSAPLG00000005192
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039676
5157872 - 5310986
153115
ENSAPLT00000005360
5158075 - 5310986
152912
ENSAPLT00000045952
5157872 - 5310986
153115