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Intron Name: Anas_platyrhynchos_platyrhynchos_8_5351960_5355727_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5351960 - 5355727

Intron Length:

3768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTCTGGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

TTTCCAATGATG

Flanking Amino Acid:

AENRKFKNLMELVEYYKHHS

Intron Amino Acid Position:

653

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

83.5

Major BPS

75.8

0.64

65.8

Major PPT

67.1

0.39

1.1

70.9

33.7

Minor 5ss

45.5

-0.5

2.9

63.6

Minor BPS

48.2

-0.2

1.9

62.61

Associated Gene:

Gene:

VAV3

Ensembl Gene ID:

ENSAPLG00000005225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037557

5340141 - 5450005

109865

ENSAPLT00000018665

5340141 - 5476556

136416

ENSAPLT00000005530

5340141 - 5472564

132424