Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5391964_5395043_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5391964 - 5395043

Intron Length:

3080

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCTATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

ATATCCTTAATT

Flanking Amino Acid:

SGEHGNLKHEKRTNGIRRNS

Intron Amino Acid Position:

490

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.8

91.6

26.4

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

79.5

0.66

0.9

78.4

35.1

Minor 5ss

38.2

-1.3

3.4

56.9

47.4

Minor BPS

85.6

1.2

0.9

91.59

30.9

Associated Gene:

Gene:

VAV3

Ensembl Gene ID:

ENSAPLG00000005225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037557

5340141 - 5450005

109865

ENSAPLT00000005530

5340141 - 5472564

132424