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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5402713_5405250_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5402713 - 5405250
Intron Length:
2538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
TSCKVCQMLLRGTFYQGYLC
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
VAV3
Ensembl Gene ID:
ENSAPLG00000005225
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037557
5340141 - 5450005
109865
ENSAPLT00000018665
5340141 - 5476556
136416
ENSAPLT00000005530
5340141 - 5472564
132424