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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5422613_5422914_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5422613 - 5422914
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCATAATTGACC
Flanking Amino Acid:
NPTTDKENKKWSYGFYLIHI
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.9
78
35.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
48.2
-0.1
1.8
56.59
41.9

Associated Gene:

Gene:
VAV3
Ensembl Gene ID:
ENSAPLG00000005225
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037557
5340141 - 5450005
109865
ENSAPLT00000018665
5340141 - 5476556
136416
ENSAPLT00000005530
5340141 - 5472564
132424