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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5423048_5423426_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5423048 - 5423426
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGGCA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGTTTTTAACC
Flanking Amino Acid:
TTLDKRARQDRHIFLFDLAV
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.7
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
24.1
-3
3.2
30.2
42.9
Minor BPS
73.1
0.7
1.2
74.27
36.7

Associated Gene:

Gene:
VAV3
Ensembl Gene ID:
ENSAPLG00000005225
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005530
5340141 - 5472564
132424
ENSAPLT00000037557
5340141 - 5450005
109865
ENSAPLT00000018665
5340141 - 5476556
136416