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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5431750_5434966_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5431750 - 5434966
Intron Length:
3217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CGTTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
EFDTVFINIPDLVKIHRSLT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.4
34
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1.1
74.9
39
Minor 5ss
34.9
-1.7
3
52.2
44.4
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
VAV3
Ensembl Gene ID:
ENSAPLG00000005225
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037557
5340141 - 5450005
109865
ENSAPLT00000018665
5340141 - 5476556
136416
ENSAPLT00000005530
5340141 - 5472564
132424