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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5442214_5443136_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5442214 - 5443136
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
CTGTCTATAACT
Flanking Amino Acid:
RTPIAIATGIRPFPTEESVD
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
88.1
0.86
0.6
84.5
23.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
66.2
0.59
1.6
80.45
41.7

Associated Gene:

Gene:
VAV3
Ensembl Gene ID:
ENSAPLG00000005225
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037557
5340141 - 5450005
109865
ENSAPLT00000018665
5340141 - 5476556
136416
ENSAPLT00000005530
5340141 - 5472564
132424