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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5443196_5449975_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5443196 - 5449975
Intron Length:
6780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTAATCACAATT
Flanking Amino Acid:
MGKNDGGIPQVIETLSKLSR
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
37.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
100
1.12
0.4
100
0
Minor 5ss
49.3
-0
2.5
66.4
45.1
Minor BPS
46
-0.2
1.8
62.49
41.6

Associated Gene:

Gene:
VAV3
Ensembl Gene ID:
ENSAPLG00000005225
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037557
5340141 - 5450005
109865