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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5551044_5552194_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5551044 - 5552194
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TACTATTTAATC
Flanking Amino Acid:
YAGIDLAVYELLKTTWLEHY
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.4
0.53
1
69
41.5
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
63.7
0.41
1.5
68.13
37.7

Associated Gene:

Gene:
SLC25A24
Ensembl Gene ID:
ENSAPLG00000006131
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006371
5550026 - 5570624
20599