About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5554220_5555172_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5554220 - 5555172
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTACTTTATCT
Flanking Amino Acid:
TAIKFWAYEQYKKILTKDDG
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.6
0.89
0.7
84.1
30.7
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
65.7
0.57
1.6
81.52
39.9

Associated Gene:

Gene:
SLC25A24
Ensembl Gene ID:
ENSAPLG00000006131
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006371
5550026 - 5570624
20599