About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5589032_5589654_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5589032 - 5589654
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
GCATAATTACTA
Flanking Amino Acid:
TCICRVSVRKELKGGKAYAK
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
67
0.42
1.1
58
38.5
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
44
-0.4
1.9
51.11
40.2

Associated Gene:

Gene:
FAM102B
Ensembl Gene ID:
ENSAPLG00000006400
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006647
5577313 - 5598778
21466