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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5589685_5590151_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5589685 - 5590151
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTCTCTTAACA
Flanking Amino Acid:
ELKGGKAYAKLGFADLNLAE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.4
0.77
0.8
81.1
29.4
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
84
1.06
1
88.68
27.3

Associated Gene:

Gene:
FAM102B
Ensembl Gene ID:
ENSAPLG00000006400
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006647
5577313 - 5598778
21466