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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5590269_5591023_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5590269 - 5591023
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GTTTTCTTGATG
Flanking Amino Acid:
NTRQDNSILKVLINMQLMSG
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
70.9
0.47
1
66
39.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
70.1
0.49
1.3
70.56
36.9

Associated Gene:

Gene:
FAM102B
Ensembl Gene ID:
ENSAPLG00000006400
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006647
5577313 - 5598778
21466