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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5594559_5595503_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5594559 - 5595503
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
GCATGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACTT
Flanking Amino Acid:
ENLIVHLGIGDLSSKSASVP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
75.8
33.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.5
0.57
1
68.7
41.8
Minor 5ss
40.6
-1.1
3
57.1
47.2
Minor BPS
50.4
0.09
1.8
67.49
44.2

Associated Gene:

Gene:
FAM102B
Ensembl Gene ID:
ENSAPLG00000006400
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006647
5577313 - 5598778
21466