Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5596368_5596457_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5596368 - 5596457

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCTCA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATATAT

U12 Branch Point Sequence:

GACCTCTCAATA

Flanking Amino Acid:

IKDASSEKLCRHPVKQDSVE

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

70.3

36.5

Major BPS

62.6

0.31

59.1

37.6

Major PPT

92.4

0.95

0.6

88.6

20.8

Minor 5ss

50.9

0.03

2.3

65.5

45.7

Minor BPS

49.4

-0

1.5

54.78

37.8

Associated Gene:

Gene:

FAM102B

Ensembl Gene ID:

ENSAPLG00000006400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006647

5577313 - 5598778

21466