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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5596985_5597315_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5596985 - 5597315
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CAAACATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GATTTCTTACAA
Flanking Amino Acid:
TSFGSHHLPNRVGSGAYEQV
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.8
0.4
1
62.5
42.7
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
56.5
0.2
1.7
66.35
39.6

Associated Gene:

Gene:
FAM102B
Ensembl Gene ID:
ENSAPLG00000006400
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006647
5577313 - 5598778
21466