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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5604368_5605907_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5604368 - 5605907
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCATGTTGTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTCCTGCATG
Flanking Amino Acid:
KKPTEAAYKTVFRAVYPSLK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
55.7
0.13
1.2
55
43.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
53.8
-0
2
65.07
42.9

Associated Gene:

Gene:
HENMT1
Ensembl Gene ID:
ENSAPLG00000025057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018727
5600831 - 5609596
8766