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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5606086_5606813_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5606086 - 5606813
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTATGATC
Flanking Amino Acid:
FEWDRAQFQSWALDAAKRYG
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
50.1
-0
1.6
66.34
33.2

Associated Gene:

Gene:
HENMT1
Ensembl Gene ID:
ENSAPLG00000025057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018727
5600831 - 5609596
8766