About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5606997_5607271_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5606997 - 5607271
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTATGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCCTTTTTAAAG
Flanking Amino Acid:
LGFDLVTCIELIEHLEESEL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.9
0.61
1
69.7
41.4
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
53.6
-0
1.5
52.19
42.9

Associated Gene:

Gene:
HENMT1
Ensembl Gene ID:
ENSAPLG00000025057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018727
5600831 - 5609596
8766