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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5613312_5616240_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5613312 - 5616240
Intron Length:
2929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCACCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATAATTGTAACT
Flanking Amino Acid:
HEVVDEIYFKVTHVEPWEKG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.3
0.52
0.8
68.7
31.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
50.1
0.08
2
71.29
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028367
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027291
5613027 - 5620543
7517