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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5616310_5616638_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5616310 - 5616638
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TTTTTTTTGAAA
Flanking Amino Acid:
TAGQTGMCGGVRGVGTGGIV
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
77.5
0.62
1.1
82.2
33.3
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
68.8
0.58
1.3
78.58
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028367
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027291
5613027 - 5620543
7517