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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5616791_5616874_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5616791 - 5616874
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGTACTTAAAG
Flanking Amino Acid:
YIRALGFMYIRYTQPPTDLW
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72.5
0.51
1.1
72
37.4
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
65
0.33
1.7
69.94
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028367
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027291
5613027 - 5620543
7517