About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5626412_5627067_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5626412 - 5627067
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
CATATCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTTCATATCA
Flanking Amino Acid:
LTFCPKKIYSVTCSGSSVGM
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75
0.56
0.9
70.6
39.4
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
50.3
0.01
1.9
64.52
41.8

Associated Gene:

Gene:
FNDC7
Ensembl Gene ID:
ENSAPLG00000006612
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006868
5625845 - 5637177
11333