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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5629137_5629541_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5629137 - 5629541
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATGA
5'SS Class:
major
3'SS Sequence:
TGAAACTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTAATGTGAAAC
Flanking Amino Acid:
TSCTSKYVATAPCSPEIKNI
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.2
37.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71.1
0.48
1
66.2
44.6
Minor 5ss
43.5
-0.7
2.8
57
47.1
Minor BPS
44.3
-0.4
2.2
58.07
40.1

Associated Gene:

Gene:
FNDC7
Ensembl Gene ID:
ENSAPLG00000006612
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006868
5625845 - 5637177
11333