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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5630767_5631872_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5630767 - 5631872
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATAACTTTAAAA
Flanking Amino Acid:
KPTDAVSLKTIPCAPGNISI
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1
65.8
33.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.9
-1.1
3.1
49.7
42.3
Minor BPS
63.7
0.43
1.4
69.07
36.5

Associated Gene:

Gene:
FNDC7
Ensembl Gene ID:
ENSAPLG00000006612
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006868
5625845 - 5637177
11333