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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5632131_5632650_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5632131 - 5632650
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGATATGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTATTCCTAACT
Flanking Amino Acid:
GDDFTYNQRTSPQAPVDVQV
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
60.8
0.24
1
54.2
41
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
72.7
0.79
1.6
89.52
34.3

Associated Gene:

Gene:
FNDC7
Ensembl Gene ID:
ENSAPLG00000006612
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006868
5625845 - 5637177
11333