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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_5638070_5641557_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5638070 - 5641557
Intron Length:
3488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTCTTCTAATT
Flanking Amino Acid:
VRGLKSLVWQKLKSAIFDDC
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
39.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.5
0.87
0.6
83.5
25
Minor 5ss
28.8
-2.4
3
29.1
36.7
Minor BPS
57.2
0.3
1.6
75.99
34.5

Associated Gene:

Gene:
STXBP3
Ensembl Gene ID:
ENSAPLG00000006737
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007077
5638027 - 5661646
23620